At this time Mr. Fox, who was still under the protection of his noble pupil, the duke, began to excite the envy and hatred of many, particularly Dr. Gardiner, then bishop of Winchester, who in the sequel became his most violent enemy.
Mr. Fox, aware of this, and seeing the dreadful persecutions then commencing, began to think of quitting the kingdom. As soon as the duke knew his intention, he endeavoured to persuade him to remain; and his arguments were so powerful, and given with so much sincerity, that he gave up the thought of abandoning his asylum for the present.
At that time the bishop of Winchester was very intimate with the duke (by the patronage of whose family he had risen to the dignity he then enjoyed,) and frequently waited on him to present his service when he several times requested that he might see his old tutor. At first the duke denied his request, at one time alleging his absence, at another, indisposition. At length it happened that Mr. Fox, not knowing the bishop was in the house, entered the room where the duke and he were in discourse; and seeing the bishop, withdrew. Gardiner asked who that was; the duke answered, "his physician, who was somewhat uncourtly, as being new come from the university." "I like his countenance and aspect very well," replied the bishop "and when occasion offers, I will send for him." The duke understood that speech as the messenger of some approaching danger; and now himself thought it high time for Mr. Fox to quit the city, and even the country. He accordingly caused every thing necessary for his flight to be provided in silence, by sending one of his servants to Ipswich to hire a bark, and prepare all the requisites for his departure. He also fixed on the house of one of his servants, who was a farmer, where he might lodge till the wind became favourable; and every thing being in readiness, Mr. Fox took leave of his noble patron, and with his wife, who was pregnant at the time, secretly departed for the ship.
The vessel was scarcely under sail, when a most violent storm came on, which lasted all day and night, and the next day drove them back to the port from which they had departed. During the time that the vessel had been at sea, an officer, despatched by the bishop of Winchester, had broken open the house of the farmer with a warrant to apprehend Mr. Fox wherever he might be found, and bring him back to the city. On hearing this news he hired a horse, under the pretence of leaving the town immediately; but secretly returned the same night, and agreed with the captain of the vessel to sail for any place as soon as the wind should shift, only desiring him to proceed, and not to doubt that God would prosper his undertaking. The mariner suffered himself to be persuaded, and within two days landed his passengers in safety at Nieuport.
After spending a few days in that place, Mr. Fox set out for Basle, where he found a number of English refugees, who had quitted their country to avoid the cruelty of the persecutors, with these he associated, and began to write his "History of the Acts and Monuments of the Church," which was first published in Latin at Basle, and shortly after in English.
In the meantime the reformed religion began again to flourish in England, and the popish faction much to decline, by the death of Queen Mary; which induced the greater number of the protestant exiles to return to their native country.
Among others, on the accession of Elizabeth to the throne, Mr. Fox returned to England; where, on his arrival, he found a faithful and active friend in his late pupil, the duke of Norfolk, till death deprived him of his benefactor: after which event, Mr. Fox inherited a pension bequeathed to him by the duke, and ratified by his son, the earl of Suffolk.